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Molecular Biology and EvolutionVolume 29, Issue 3, March 2012, Pages 915-927

The expansion of mtDNA haplogroup L3 within and out of Africa(Review)(Open Access)

  • Soares, P.,
  • Alshamali, F.,
  • Pereira, J.B.,
  • Fernandes, V.,
  • Silva, N.M.,
  • Afonso, C.,
  • Costa, M.D.,
  • Musilová, E.,
  • MacAulay, V.,
  • Richards, M.B.,
  • Černý, V.,
  • Pereira, L.
  • View Correspondence (jump link)
  • aIPATIMUP (Instituto de Patologia e Imunologia Molecular da Universidade Do Porto), Porto, Portugal
  • bGeneral Department of Forensic Sciences and Criminology, Dubai Police GHQ, Dubai, United Arab Emirates
  • cInstitute of Integrative and Comparative Biology, Faculty of Biological Sciences, University of Leeds, Leeds, United Kingdom
  • dDepartment of Anthropology and Human Genetics, Faculty of Science, Charles University, Prague, Czech Republic
  • eDepartment of Statistics, University of Glasgow, Glasgow, United Kingdom
  • fArchaeogenetics Laboratory, Institute of Archaeology, Academy of Sciences of the Czech Republic, Prague, Czech Republic
  • gFaculdade de Medicina, Universidade Do Porto, Porto, Portugal

Abstract

Although fossil remains show that anatomically modern humans dispersed out of Africa into the Near East ∼100 to 130 ka, genetic evidence from extant populations has suggested that non-Africans descend primarily from a single successful later migration. Within the human mitochondrial DNA (mtDNA) tree, haplogroup L3 encompasses not only many sub-Saharan Africans but also all ancient non-African lineages, and its age therefore provides an upper bound for the dispersal out of Africa. An analysis of 369 complete African L3 sequences places this maximum at ∼70 ka, virtually ruling out a successful exit before 74 ka, the date of the Toba volcanic supereruption in Sumatra. The similarity of the age of L3 to its two non-African daughter haplogroups, M and N, suggests that the same process was likely responsible for both the L3 expansion in Eastern Africa and the dispersal of a small group of modern humans out of Africa to settle the rest of the world. The timing of the expansion of L3 suggests a link to improved climatic conditions after ∼70 ka in Eastern and Central Africa rather than to symbolically mediated behavior, which evidently arose considerably earlier. The L3 mtDNA pool within Africa suggests a migration from Eastern Africa to Central Africa ∼60 to 35 ka and major migrations in the immediate postglacial again linked to climate. The largest population size increase seen in the L3 data is 3-4 ka in Central Africa, corresponding to Bantu expansions, leading diverse L3 lineages to spread into Eastern and Southern Africa in the last 3-2 ka. © 2011 The Author.

Author keywords

complete genomeshaplogroup L3modern human expansionsmtDNAout of Africa

Indexed keywords

EMTREE drug terms:mitochondrial DNA
EMTREE medical terms:AfricaCentral AfricaDNA sequencehumanhuman tissuereviewsequence analysis
MeSH:AfricaAfrican Continental Ancestry GroupBase SequenceBayes TheoremDNA, MitochondrialEmigration and ImmigrationEvolution, MolecularHaplotypesHistory, AncientHumansLikelihood FunctionsModels, GeneticMolecular Sequence DataPhylogenyPhylogeographyPopulation DensityPopulation DynamicsSequence Analysis, DNA

Chemicals and CAS Registry Numbers:

DNA, Mitochondrial

  • ISSN: 07374038
  • CODEN: MBEVE
  • Source Type: Journal
  • Original language: English
  • DOI: 10.1093/molbev/msr245
  • PubMed ID: 22096215
  • Document Type: Review

  Pereira, L.; IPATIMUP (Instituto de Patologia e Imunologia Molecular da Universidade Do Porto), Portugal;
© Copyright 2012 Elsevier B.V., All rights reserved. © MEDLINE® is the source for the MeSH terms of this document.

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