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ScienceVolume 356, Issue 6337, 5 May 2017, Pages 543-546

Dispersals and genetic adaptation of Bantu-speaking populations in Africa and North America(Article)

  • Patin, E.,
  • Lopez, M.,
  • Grollemund, R.,
  • Verdu, P.,
  • Harmant, C.,
  • Quach, H.,
  • Laval, G.,
  • Perry, G.H.,
  • Barreiro, L.B.,
  • Froment, A.,
  • Heyer, E.,
  • Massougbodji, A.,
  • Fortes-Lima, C.,
  • Migot-Nabias, F.,
  • Bellis, G.,
  • Dugoujon, J.-M.,
  • Pereira, J.B.,
  • Fernandes, V.,
  • Pereira, L.,
  • Van Der Veen, L.,
  • Mouguiama-Daouda, P.,
  • Bustamante, C.D.,
  • Hombert, J.-M.,
  • Quintana-Murci, L.
  • View Correspondence (jump link)
  • aHuman Evolutionary Genetics, Institut Pasteur, Paris, 75015, France
  • bCentre National de La Recherche Scientifique URA3012, Paris, 75015, France
  • cCenter of Bioinformatics, Biostatistics, and Integrative Biology, Institut Pasteur, Paris, 75015, France
  • dEvolutionary Biology Group, School of Biological Sciences, University of Reading, Reading, RG6 6BX, United Kingdom
  • eDepartments of English and Anthropology, University of Missouri, Columbia, MO 65211, United States
  • fCentre National de La Recherche Scientifique UMR7206, Muséum National d'Histoire Naturelle, Université Paris Diderot, Sorbonne Paris Cité, Paris, 75016, France
  • gDepartments of Anthropology and Biology, Pennsylvania State University, University Park, PA 16802, United States
  • hUniversité de Montréal, Centre de Recherche CHU Sainte-Justine, Montréal, QC H3T 1C5, Canada
  • iInstitut de Recherche Pour Le Développement, UMR 208, Muséum National d'Histoire Naturelle, Paris, 75005, France
  • jCentre d'Etude et de Recherche Sur Le Paludisme Associé à la Grossesse et l'Enfance (CERPAGE), Cotonou, Benin
  • kInstitut de Recherche Clinique du Bénin (IRCB), 01 BP 188, Cotonou, Benin
  • lAnthropologie Moléculaire et Imagerie de Synthèse, Centre National de La Recherche Scientifique UMR 5288, Université Paul Sabatier Toulouse 3, Toulouse Cedex 3, 31073, France
  • mInstitut de Recherche Pour Le Développement, UMR 216, Paris, 75006, France
  • nCommunautés d'Universités et Etablissements (COMUE), Sorbonne Paris Cité, Faculté de Pharmacie, Université Paris Descartes, Paris, 75006, France
  • oInstitut National d'Etudes Démographiques, Paris, 75020, France
  • pInstituto de Investigação e Inovação Em Saúde (i3S), Universidade Do Porto, Porto, 4200-135, Portugal
  • qInstituto de Patologia e Imunologia Molecular Da Universidade Do Porto (IPATIMUP), Porto, 4200-465, Portugal
  • rFaculdade de Medicina, Universidade Do Porto, Porto, 4200-319, Portugal
  • sCentre National de La Recherche Scientifique UMR 5596, Dynamique du Langage, Université Lumière-Lyon 2, Lyon, 69007, France
  • tLaboratoire Langue, Culture et Cognition (LCC), Université Omar Bongo, Libreville, 13131, Gabon
  • uDepartment of Genetics, Stanford University, Stanford, CA 94305, United States
  • vDepartment of Biomedical Data Science, Stanford University, Stanford, CA 94305, United States

Abstract

Bantu languages are spoken by about 310 million Africans, yet the genetic history of Bantu-speaking populations remains largely unexplored. We generated genomic data for 1318 individuals from 35 populations in western central Africa, where Bantu languages originated. We found that early Bantu speakers first moved southward, through the equatorial rainforest, before spreading toward eastern and southern Africa. We also found that genetic adaptation of Bantu speakers was facilitated by admixture with local populations, particularly for the HLA and LCT loci. Finally, we identified a major contribution of western central African Bantu speakers to the ancestry of African Americans, whose genomes present no strong signals of natural selection. Together, these results highlight the contribution of Bantu-speaking peoples to the complex genetic history of Africans and African Americans. © 2017, American Association for the Advancement of Science. All rights reserved.

Indexed keywords

GEOBASE Subject Index:adaptationgenetic analysisgenomicshuman evolutionnatural selection
EMTREE medical terms:AfricaAfricanAfrican AmericanArticleCentral AfricaCentral Africanevolutionary adaptationgene locusgenomegenomicshumanlanguagemajor clinical studynatural selectionNorth Americapopulationpopulation dispersalpriority journalrain forestspeechadaptationgene locusgeneticslanguagemigrationsingle nucleotide polymorphismspeech
Regional Index:Central AfricaNorth America
EMTREE drug terms:HLA antigenlactase
MeSH:Adaptation, PhysiologicalAfrica, CentralAfrican AmericansGenetic LociHLA AntigensHuman MigrationHumansLactaseLanguageNorth AmericaPolymorphism, Single NucleotideRainforestSpeech

Chemicals and CAS Registry Numbers:

lactase, 9031-11-2;

HLA Antigens; Lactase

Funding details

Funding sponsor Funding number Acronym
National Human Genome Research Institute
See opportunities
Agence Nationale de la Recherche
See opportunities
Centre National de la Recherche Scientifique
ANR-14-CE02-0003-01
Institut Pasteur
  • 1

    We thank all participants who donated samples and participated in this study. We thank C. Schlebusch and G. Hellenthal for helpful discussions. We thank E. Soumonni, a historian whose advice guided the recruitment of Beninese individuals, and J.-P. Chippaux (CERPAGE, Cotonou, Benin) for his help with local authorities. We thank the African Variation Genome Project, the Data Access Committee Chair for the National Human Genome Research Institute (particularly V. Ota Wang), the Electronic Medical Records and Genomics (eMERGE) Genome-Wide Association Study, the Multiethnic Cohort Study, the Gene, Environment Association Studies consortium (GENEVA), and the Health Aging and Body Composition (Health ABC) Study for kindly providing access to their data. Detailed acknowledgments can be found elsewhere (10). This work was funded by the Institut Pasteur, the Centre National de la Recherche Scientifique (CNRS), Agence Nationale de la Recherche (ANR) grant AGRHUM (ANR-14-CE02-0003-01), and the "Histoire du G?nome des Populations Humaines Gabonaises" project (Institut Pasteur/Republic of Gabon). The newly generated SNP genotype data have been deposited in the European Genome-Phenome Archive under accession code EGAS00001002078.

  • ISSN: 00368075
  • CODEN: SCIEA
  • Source Type: Journal
  • Original language: English
  • DOI: 10.1126/science.aal1988
  • PubMed ID: 28473590
  • Document Type: Article
  • Publisher: American Association for the Advancement of Science

  Patin, E.; Human Evolutionary Genetics, Institut Pasteur, Paris, France;
© Copyright 2017 Elsevier B.V., All rights reserved.

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