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Scientific DataVolume 5, 20 March 2018, Article number 140047

Data Descriptor: A genome-scale RNAi screen for genetic interactors of the dynein co-factor nud-2 in Caenorhabditis elegans(Article)(Open Access)

  • aInstituto de Investigação e Inovação em Saúde (i3S), Universidade Do Porto, Porto, Portugal
  • bInstituto de Biologia Molecular e Celular (IBMC), Universidade Do Porto, Portugal

Abstract

Cytoplasmic dynein 1 (dynein) is the predominant microtubule minus end-directed motor in animals and participates in a wide range of cellular processes, including membrane trafficking, nuclear migration, and cell division. Dynein's functional diversity depends on co-factors that regulate its subcellular localization, interaction with cargo, and motor activity. The ubiquitous co-factor nuclear distribution gene E (NudE) is implicated in many of dynein's functions, and mutations in NudE cause the brain developmental disease microcephaly. To identify genetic interactors of the Caenorhabditis elegans NudE homolog nud-2, we performed a genome-wide RNAi screen with the null allele nud-2(ok949), which compromises dynein function but leaves animals viable and fertile. Using bacterial feeding to deliver dsRNAs in a 96-well liquid format and a semi-automated fluorescence microscopy approach for counting parents and progeny, we screened 19762 bacterial clones and identified 38 genes whose inhibition caused enhanced lethality in nud-2(ok949) relative to the nud-2(+) control. Further study of these genes, many of which participate in cell division, promises to provide insight into the function and regulation of dynein. © The Author(s) 2018.

Indexed keywords

EMTREE drug terms:Caenorhabditis elegans proteincarrier proteincytoplasmic dynein
EMTREE medical terms:animalCaenorhabditis elegansgeneticsgenomeRNA interference
MeSH:AnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsCarrier ProteinsCytoplasmic DyneinsGenome, HelminthRNA Interference

Chemicals and CAS Registry Numbers:

carrier protein, 80700-39-6;

Caenorhabditis elegans Proteins; Carrier Proteins; Cytoplasmic Dyneins

Funding details

Funding sponsor Funding number Acronym
European Molecular Biology Organization
See opportunities
Seventh Framework Programme
European Research Council
Norte-01-0145-FEDER-000029-Advancing,SFRH/BD/103495/2014,IF/01015/2013/CP1157/CT0006
European Research Council
2545
European Regional Development Fund
NORTE 2020
  • 1

    The authors acknowledge the support of the BioSciences Screening i3S Scientific Platform. Funding for this project was provided by the European Research Council under the European Union's Seventh Framework Programme (ERC grant agreement n o ERC-2013-StG-338410-DYNEINOME to R.G.), by the European Molecular Biology Organization (EMBO Installation Grant 2545 to R.G.), by the Fundacao para a Ciencia e a Tecnologia (IF/01015/2013/CP1157/CT0006 to R.G. and SFRH/BD/103495/2014 to H. R.), and by 'Norte-01-0145-FEDER-000029-Advancing cancer research: from basic knowledge to application', supported by the Norte Portugal Regional Operational Programme (NORTE 2020), under the Portugal 2020 Partnership Agreement through the European Regional Development Fund (FEDER)

  • ISSN: 20524463
  • Source Type: Journal
  • Original language: English
  • DOI: 10.1038/sdata.2018.47
  • PubMed ID: 29557975
  • Document Type: Article
  • Publisher: Nature Publishing Groups

  Maia, A.F.; Instituto de Investigação e Inovação em Saúde (i3S), Universidade Do Porto, Porto, Portugal;
© Copyright 2018 Elsevier B.V., All rights reserved.

Cited by 1 document

Celestino, R. , Henen, M.A. , Gama, J.B.
A transient helix in the disordered region of dynein light intermediate chain links the motor to structurally diverse adaptors for cargo transport
(2019) PLoS Biology
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