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PLoS BiologyVolume 17, Issue 1, 1 January 2019, Article number e3000100

A transient helix in the disordered region of dynein light intermediate chain links the motor to structurally diverse adaptors for cargo transport(Article)(Open Access)

  • Celestino, R.,
  • Henen, M.A.,
  • Gama, J.B.,
  • Carvalho, C.,
  • McCabe, M.,
  • Barbosa, D.J.,
  • Born, A.,
  • Nichols, P.J.,
  • Carvalho, A.X.,
  • Gassmann, R.,
  • Vögeli, B.
  • View Correspondence (jump link)
  • aInstituto de Biologia Molecular e Celular (IBMC), Universidade do Porto, Porto, Portugal
  • bInstituto de Investigação e Inovação em Saúde (i3S), Universidade do Porto, Porto, Portugal
  • cDepartment of Biochemistry and Molecular Genetics, University of Colorado Denver, Anschutz Medical Campus, Aurora, CO, United States
  • dFaculty of Pharmacy, Mansoura University, Mansoura, Egypt

Abstract

All animal cells use the motor cytoplasmic dynein 1 (dynein) to transport diverse cargo toward microtubule minus ends and to organize and position microtubule arrays such as the mitotic spindle. Cargo-specific adaptors engage with dynein to recruit and activate the motor, but the molecular mechanisms remain incompletely understood. Here, we use structural and dynamic nuclear magnetic resonance (NMR) analysis to demonstrate that the C-terminal region of human dynein light intermediate chain 1 (LIC1) is intrinsically disordered and contains two short conserved segments with helical propensity. NMR titration experiments reveal that the first helical segment (helix 1) constitutes the main interaction site for the adaptors Spindly (SPDL1), bicaudal D homolog 2 (BICD2), and Hook homolog 3 (HOOK3). In vitro binding assays show that helix 1, but not helix 2, is essential in both LIC1 and LIC2 for binding to SPDL1, BICD2, HOOK3, RAB-interacting lysosomal protein (RILP), RAB11 family-interacting protein 3 (RAB11FIP3), ninein (NIN), and trafficking kinesin-bind-ing protein 1 (TRAK1). Helix 1 is sufficient to bind RILP, whereas other adaptors require additional segments preceding helix 1 for efficient binding. Point mutations in the C-terminal helix 1 of Caenorhabditis elegans LIC, introduced by genome editing, severely affect development, locomotion, and life span of the animal and disrupt the distribution and transport kinetics of membrane cargo in axons of mechanosensory neurons, identical to what is observed when the entire LIC C-terminal region is deleted. Deletion of the C-terminal helix 2 delays dynein-dependent spindle positioning in the one-cell embryo but overall does not significantly perturb dynein function. We conclude that helix 1 in the intrinsically disordered region of LIC provides a conserved link between dynein and structurally diverse cargo adaptor families that is critical for dynein function in vivo. © 2019 Celestino et al.

Indexed keywords

EMTREE drug terms:adaptor proteinbicaudal D homolog 2 proteincargo adaptor proteindynein adenosine triphosphatasehook homolog 3 proteinninein proteinRAB interacting lysosomal proteinRAB11 family interacting protein 3spindly proteintrafficking kinesin binding protein 1unclassified drug
EMTREE medical terms:Articleaxonbinding assaybinding siteCaenorhabditis eleganscarboxy terminal sequencegene editingin vitro studyin vivo studylifespanlight intermediate chainlocomotionnuclear magnetic resonancepoint mutationprotein bindingprotein structureprotein transportsensory nerve cellsequence alignmentsequence analysis

Chemicals and CAS Registry Numbers:

dynein adenosine triphosphatase

Funding details

Funding sponsor Funding number Acronym
University of ColoradoCU
European Research CouncilERC-2013-StG-338410-DYNEINOMEERC
Fundação para a Ciência e a Tecnologia
See opportunities by FCT
IF/01015/2013/CP1157/CT0006FCT
Fundação para a Ciência e a Tecnologia
See opportunities by FCT
NORTE-01-0145-FEDER-030507FCT
Fundação para a Ciência e a Tecnologia
See opportunities by FCT
SFRH/ BPD/101898/2014FCT
Federación Española de Enfermedades RarasFEDER
Ministério da Ciência, Tecnologia e Ensino SuperiorNORTE-01-0145-FEDER-030507MCTES
  • 1

    This work was financed by the Fundo Europeu de Desenvolvimento Regional (FEDER) through the Norte Portugal Regional Operational Programme (NORTE 2020), Portugal 2020 (RG); by the Fundação para a Ciência e a Tecnologia (FCT)/Ministério da Ciência, Tecnologia e Ensino Superior in the framework of the project NORTE-01-0145-FEDER-030507 (RG); by FCT fellowships IF/01015/2013/CP1157/CT0006 (RG) and SFRH/ BPD/101898/2014 (DJB); by the European Research Council under the European Union’s Seventh Framework Programme, ERC grant agreement no. ERC-2013-StG-338410-DYNEINOME (RG), and by a start-up package of the University of Colorado (BV). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript. The authors thank Tiago Dantas (IBMC/i3S) for critical reading of the manuscript and Joana Leite (IBMC/i3S) for help with rose diagrams. The authors also thank David Jones and Shaun Bevers (University of Colorado, Denver) for help and support with NMR, SPR, and MST measurements.

  • ISSN: 15449173
  • CODEN: PBLIB
  • Source Type: Journal
  • Original language: English
  • DOI: 10.1371/journal.pbio.3000100
  • PubMed ID: 30615611
  • Document Type: Article
  • Publisher: Public Library of Science

  Gassmann, R.; Instituto de Biologia Molecular e Celular (IBMC), Universidade do Porto, Porto, Portugal;
© Copyright 2019 Elsevier B.V., All rights reserved.

Cited by 1 document

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